Convert an agglomerated dataframe to a phyloseq object.

agglomerated_to_phyloseq(agg, sample_col, otu_col, count_col, sample_metadata,
  tax_ranks)

Arguments

agg	the agglomerated dataframe
sample_col	the name of the sample id column in agg
otu_col	the name of the otu id column in agg
count_col	the unquoted name of the counts column in agg
sample_metadata	unquoted names of sample metadata
tax_ranks	unquoted names of taxonomic ranks (i.e. Kingdom:Species)